thirdlayerinc/autoagentPublic

autonomous harness engineering

AI summary: An autonomous engineering loop that iteratively optimizes AI agent configurations and prompts overnight.

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PythonNo licenseCreated Apr 2, 2026Last push 5mo ago+3 stars this week+9 this month

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since Mar 29, 2026
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4.6K stars as of Sep 9, 2026, tracked back to Mar 29, 2026. Historical curve reconstructed from public GitHub event archives, calibrated to the current total.

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2 commits in the last yearLessMore

Signals and awards

derived from tracked data
  • Continuous integration

    Automated checks passing

What autoagent does

AutoAgent is an experimental meta-agent framework designed to completely automate the notoriously laborious process of complex agent engineering. It autonomously builds, tests, and iteratively refines an agent harness based entirely on a defined markdown program instead of traditional Python scripts. The meta-agent iteratively modifies core system prompts, tool definitions, and underlying orchestration logic, then runs benchmarks to effectively evaluate the changes. By continuously discarding performance regressions and keeping measurable improvements, it effectively automates prompt engineering and architecture refinement. It is specifically designed to run continuously overnight to exhaustively explore complex prompt and configuration spaces without any human intervention.

AI engineers and researchers who want to automate the tedious process of tuning prompts, tools, and orchestration logic for complex agents.

  • Autonomous Optimization Loop: Iteratively modifies agent configurations and tests them without requiring human intervention.
  • Markdown-Driven Programming: Uses a simple program.md file to define the operational context and goals instead of complex code.
  • Benchmark-Driven Refinement: Automatically evaluates configuration changes against a defined scoring metric and discards regressions.
  • Comprehensive Configuration Tuning: Modifies system prompts, tool definitions, and orchestration logic simultaneously.
  • Unattended Execution: Designed to run continuously overnight to exhaustively explore complex prompt and configuration spaces.

Where teams use it

Automated Prompt Optimization

Developers define a high-level goal and let the system autonomously discover the most effective system prompt through trial and error.

Tool Selection Tuning

The meta-agent tests different combinations of available tools to determine the optimal set required for a specific task.

Continuous Benchmarking

Engineers run the loop continuously to improve their agent's score on a standardized evaluation dataset automatically.

Architecture Exploration

Researchers use the framework to automatically discover novel orchestration patterns for complex agent workflows.

Getting started: curl -LsSf https://astral.sh/uv/install.sh | sh

README

main branch

thirdlayer

We're launching a product around self-configuring agents soon. Sign up here.
We're hiring engineers. If this work interests you, reach out to hello@thirdlayer.inc with your Github link.

AutoAgent

Like autoresearch but for agent engineering. Give an AI agent a task, let it build and iterate on an agent harness autonomously overnight. It modifies the system prompt, tools, agent configuration, and orchestration, runs the benchmark, checks the score, keeps or discards the change, and repeats.

teaser

The core idea is the same: you're not touching the harness Python files like you normally would as an engineer. Instead, you program program.md, the Markdown file that provides context to the meta-agent and defines the agent-engineering loop.

How it works

The repo has a few files and directories that matter:

  • agent.py -- the entire harness under test in a single file. It contains config, tool definitions, agent registry, routing/orchestration, and the Harbor adapter boundary. The adapter section is explicitly marked as fixed; the rest is the primary edit surface for the meta-agent.
  • program.md -- instructions for the meta-agent + the directive (what kind of agent to build). This file is edited by the human.
  • tasks/ -- evaluation tasks in harbor format. In a clean baseline branch, benchmark payloads may be omitted and added in benchmark-specific branches.
  • .agent/ -- optional workspace artifacts for reusable instructions, notes, prompts, or skills.

The metric is total score produced by the benchmark's task test suites. The meta-agent hill-climbs on this score.

Quick start

Requirements: Docker, Python 3.10+, uv, and whatever model-provider credentials your current agent.py harness requires.

# 1. Install uv (if you don't have it)
curl -LsSf https://astral.sh/uv/install.sh | sh

# 2. Install dependencies
uv sync

# 3. Set up the environment variables required by your current agent/runtime
# Example:
cat > .env << 'EOF'
OPENAI_API_KEY=...
EOF

# 4. Build base image
docker build -f Dockerfile.base -t autoagent-base .

# 5. Add tasks to tasks/ (see Task format section below)

# 6. Run a single benchmark task
rm -rf jobs; mkdir -p jobs && uv run harbor run -p tasks/ --task-name "<task-name>" -l 1 -n 1 --agent-import-path agent:AutoAgent -o jobs --job-name latest > run.log 2>&1

# 7. Run all tasks in parallel (-n = concurrency, default 4)
rm -rf jobs; mkdir -p jobs && uv run harbor run -p tasks/ -n 100 --agent-import-path agent:AutoAgent -o jobs --job-name latest > run.log 2>&1

Running the meta-agent

Point your coding agent at the repo and prompt:

Read program.md and let's kick off a new experiment!

The meta-agent will read the directive, inspect the current harness, run the benchmark, diagnose failures, modify agent.py, and iterate.

Project structure

agent.py                       -- single-file harness under test
  editable harness section     -- prompt, registries, tools, routing
  fixed adapter section        -- Harbor integration + trajectory serialization
program.md                     -- meta-agent instructions + directive
Dockerfile.base                -- base image
.agent/                        -- optional agent workspace artifacts
tasks/                         -- benchmark tasks, typically added in benchmark-specific branches
jobs/                          -- Harbor job outputs
results.tsv                    -- experiment log (created by meta-agent, gitignored)
run.log                        -- latest run output

Task format

The repo ships without tasks. Add your own to tasks/ following Harbor's task format:

tasks/my-task/
  task.toml           -- config (timeouts, metadata)
  instruction.md      -- prompt sent to the agent
  tests/
    test.sh           -- entry point, writes /logs/reward.txt
    test.py           -- verification (deterministic or LLM-as-judge)
  environment/
    Dockerfile        -- task container (FROM autoagent-base)
  files/              -- reference files mounted into container

Tests write a score (0.0-1.0) to the verifier logs. The meta-agent hill-climbs on this. See the Harbor docs for full details on writing and porting tasks.

Design choices

  • Program the meta-agent, not the harness directly. The human steers the loop through program.md, while the meta-agent edits agent.py.
  • Single-file, registry-driven harness. The implementation lives in one file for simplicity, but agent and tool registration stay structured so the harness can still evolve cleanly.
  • Docker isolation. The agent runs in a container. It can't damage the host.
  • Score-driven. Every experiment produces a numeric score. Keep if better, discard if not. Same loop as autoresearch.
  • Harbor-compatible tasks. Tasks use the same format as harbor benchmarks, so the same harness can be evaluated on different datasets.

Cleanup

Docker images and containers accumulate across runs. Clean up regularly:

# Harbor's cached task images + task cache
uv run harbor cache clean -f

# Full Docker nuke (all unused images, build cache, etc.)
docker system prune -a -f

# Lighter: just dead containers
docker container prune -f

If Docker becomes unresponsive (for example after many concurrent runs), restart Docker Desktop:

killall Docker && open -a Docker

Improving performance with skills

You can equip the agent with Agent Skills for Context Engineering and context7 skills to improve performance.

License

MIT

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DateListRankStars gained
Apr 5, 2026daily#24+228
Apr 4, 2026daily#10+313